Publications

Lena Hackl, Amit Fenn, Zakaria Louadi, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy (2023). Alternative splicing impacts microRNA regulation within coding regions. bioRxiv.

Chit Tong Lio, Gordon Grabert, Zakaria Louadi, Amit Fenn, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy (2023). Systematic analysis of alternative splicing in time course data using Spycone. Bioinformatics.

Chit Tong Lio, Zakaria Louadi, Amit Fenn, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy (2022). Systematic analysis of alternative splicing in time course data using Spycone. bioRxiv.

Olga Tsoy, Arcady Mushegian (2022). Florigen and its homologs of FT/CETS/PEBP/RKIP/YbhB family may be the enzymes of small molecule metabolism: review of the evidence. BMC Plan Biology.

Amit Fenn, Olga Tsoy, Tim Faro, Fanny Rößler, Alexandr Dietrich, Jonahhes Kersting, Zakaria Louadi, Chit Tong Lio, Uwe Voelker, Jan Baumbach, Tim Kacprowski, Markus List (2022). Alternative splicing analysis benchmark with DICAST. bioRxiv.

Zakaria Louadi, Maria L. Elkjaer, Melissa Klug, Chit Tong Lio, Amit Fenn, Zsolt Illes, Dario Bongiovanni, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy (2021). Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases. Genome Biology.

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Zakaria Louadi, Maria L. Elkjaer, Melissa Klug, Chit Tong Lio, Amit Fenn, Zsolt Illes, Dario Bongiovanni, Jan Baumbach, Tim Kacprowski, Markus List, Olga Tsoy (2021). Functional enrichment of alternative splicing events with NEASE reveals insights into tissue identity and diseases. bioRxiv.

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Manz Quirin, Olga Tsoy, Amit Fenn, Jan Baumbach, Uwe Völker, Markus List, Tim Kacprowski (2021). ASimulatoR: splice-aware RNA-Seq data simulation. Bioinformatics.

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Zakaria Louadi, Kevin Yuan, Alexander Gress, Olga Tsoy, Olga V. Kalinina, Jan Baumbach, Tim Kacprowski, Markus List (2020). DIGGER: exploring the functional role of alternative splicing in protein interactions. Nucleic Acid Research.

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